Zhang et al. (under review), ROCker models for reliable detection and typing of short read sequences carrying β-lactamases.
| Name | Description | Files |
|---|---|---|
| Mock sequences "1910" | FastA files including simulated reads used to test different tools |
mock_1910 150bp (260Kb) mock_1910 250bp (260Kb) |
| Mock sequences "2003" | FastA files including simulated reads used to test different tools |
mock_2003 150bp (260Kb) mock_2003 250bp (260Kb) |
| HMM for blaOXA | Custom HMM for betalactamase family OXA | blaOXA_2.hmm (123Kb) |
| HMM for blaTEM | Custom HMM for betalactamase family TEM | blaTEM.hmm (131Kb) |
In addition, all β-lactamase ROCker models built for this manuscript are available here.