Public data

from Kostas lab

This website contains links to publicly available data released by Kostas lab.
See also: Publications from Kostas lab and Research projects at Kostas lab.

Description of Macondimonas diazotrophica (under review)
A Novel Hydrocarbonoclastic Gammaproteobacterium as a Potential Biomarker for Ecosystem Recovery from Oil Spills
Anaerobic degradation of phenanthrene (under review)
Anaerobic degradation of phenanthrene coupled to sulfate reduction in seafloor sediments from the northern Gulf of Mexico
MAGs Vieques (under review)
Microbial description of a military impacted lagoon in Vieques, Puerto Rico
Soil multi-omics (under review)
Multi-omics of Soil Microcosms
PR Soils (under review)
Taxonomic and functional characterization of tropical rainforest soil microbial communities along an elevation gradient and implications for nitrogen cycling
Vaginal microbiota (under review)
Vaginal Microbiota in Gynecologic Cancer Patients Pre- and Post-Radiation Therapy
BAC disinfectants (under review)
Pseudomonas aeruginosa DPB isolate
Fertilizers (under review)
Year-round metagenomes reveal stable microbial communities in agricultural soils and novel ammonia oxidizers responding to fertilization.
Cassava (under review)
Metagenomic analysis of the microbial communities in a cassava flour processing plant.
FastANI (2017 pre-pub)
Fast Average Nucleotide Identity - FastANI
Kalamas MAGs (2018)
Quantifying the changes in genetic diversity within sequence-discrete bacterial populations across a spatial and temporal riverine gradient
16S/ANI (2018)
How much do rRNA gene surveys underestimate extant bacterial diversity?
Showerheads (2016)
Characterization of biofilms developing on hospital shower hoses and implications for nosocomial infections.
ROCker (2016)
ROCker: a pipeline for accurate detection and quantification of target genes in short-read metagenomic datasets.
Kalamas (2016)
Anthropogenic effects on bacterial diversity and function in Kalamas (Northwest Greece).
Oil spill (2015)
Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill.
Nonpareil (2014)
Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.
MTR (2014)
Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.
MyTaxa (2014)
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences.
E. coli (2011)
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species.