Public data

from Kostas lab

This website contains links to publicly available data released by Kostas lab.
See also: Publications from Kostas lab and Research projects at Kostas lab.

16S/ANI (under review)
How much do rRNA gene surveys underestimate extant bacterial diversity?
BAC disinfectants (under review)
Pseudomonas aeruginosa DPB isolate
FastANI (2017 pre-pub)
Fast Average Nucleotide Identity - FastANI
Fertilizers (under review)
Year-round metagenomes reveal stable microbial communities in agricultural soils and novel ammonia oxidizers responding to fertilization.
Cassava (under review)
Metagenomic analysis of the microbial communities in a cassava flour processing plant.
Showerheads (2016)
Characterization of biofilms developing on hospital shower hoses and implications for nosocomial infections.
ROCker (2016)
ROCker: a pipeline for accurate detection and quantification of target genes in short-read metagenomic datasets.
Kalamas (2016)
Anthropogenic effects on bacterial diversity and function in Kalamas (Northwest Greece).
Oil spill (2015)
Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill.
Nonpareil (2014)
Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.
MTR (2014)
Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.
MyTaxa (2014)
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences.
E. coli (2011)
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species.