Public data

from Kostas lab

This website contains links to publicly available data released by Kostas lab.
See also: Publication from Kostas lab and Research projects at Kostas lab.

Nonpareil
Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.
MTR
Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.
MyTaxa
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences.
Oil spill
Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill.
Showerheads
Characterization of biofilms developing on hospital shower hoses and implications for nosocomial infections.
E. coli
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species.
Cassava
Metagenomic analysis of the microbial communities in a cassava flour processing plant.
Kalamas
Anthropogenic effects on bacterial diversity and function in Kalamas (Northwest Greece).
ROCker
ROCker: a pipeline for accurate detection and quantification of target genes in short-read metagenomic datasets.