ROCker

Accurately detecting functional genes in metagenomes

§ Available models

FNR: False Negative Rate (1-Sensitivity), FPR: False Positive Rate or fall-out (1-Specificity), Acc: Accuracy.

Model name Dynamic model statistics 50 bit-score statistics ROCker plot Files Training set Comments
RpoB: Ribosomal RNA polymerase B subunit, Prepared by Luis M Rodriguez-R [with --search diamond]
RpoB for 80bp-long reads FNR: 0.05%
FPR: 0.64%
Acc: 99.90%
FNR: 3.28%
FPR: 0.39%
Acc: 96.94%
ROCker plot of RpoB.80 ROCker model Positive:
757 proteins
Reference dataset
Last update: Jun-09-2015
RpoB for 100bp-long reads FNR: 0.10%
FPR: 0.59%
Acc: 99.81%
FNR: 2.13%
FPR: 0.63%
Acc: 98.14%
ROCker plot of RpoB.100 ROCker model
RpoB for 150bp-long reads FNR: 0.13%
FPR: 0.01%
Acc: 99.98%
FNR: 1.30%
FPR: 0.01%
Acc: 98.88%
ROCker plot of RpoB.150 ROCker model
RpoB for 200bp-long reads FNR: 0.22%
FPR: 0.01%
Acc: 99.98%
FNR: 1.11%
FPR: 0.01%
Acc: 99.93%
ROCker plot of RpoB.200 ROCker model
RpoB for 250bp-long reads FNR: 0.17%
FPR: 0.00%
Acc: 99.99%
FNR: 1.14%
FPR: 0.01%
Acc: 99.95%
ROCker plot of RpoB.250 ROCker model
RpoB for 500bp-long reads FNR: 0.29%
FPR: 0.00%
Acc: 99.99%
FNR: 0.93%
FPR: 0.01%
Acc: 99.98%
ROCker plot of RpoB.500 ROCker model
NarG: Nitrate reductase, Prepared by Despina Tsementzi & Luis M Rodriguez-R [with --search diamond]
NarG for 80bp-long reads FNR: 0.10%
FPR: 11.41%
Acc: 97.81%
FNR: 1.44%
FPR: 11.59%
Acc: 96.68%
ROCker plot of NarG.80 ROCker model Positive:
679 proteins
Negative:
31 proteins
Reference dataset
Explicitly excludes very similar proteins such as NarK and NXR, hence reducing the observed specificity.
Last update: Jun-11-2015
NarG for 100bp-long reads FNR: 0.98%
FPR: 5.30%
Acc: 97.58%
FNR: 1.75%
FPR: 6.12%
Acc: 96.79%
ROCker plot of NarG.100 ROCker model
NarG for 150bp-long reads FNR: 0.27%
FPR: 0.20%
Acc: 99.80%
FNR: 0.77%
FPR: 0.23%
Acc: 99.74%
ROCker plot of NarG.150 ROCker model
NarG for 200bp-long reads FNR: 0.24%
FPR: 0.12%
Acc: 99.87%
FNR: 0.94%
FPR: 0.18%
Acc: 99.79%
ROCker plot of NarG.200 ROCker model
NarG for 250bp-long reads FNR: 0.39%
FPR: 0.09%
Acc: 99.91%
FNR: 1.16%
FPR: 0.23%
Acc: 99.74%
ROCker plot of NarG.250 ROCker model
NarG for 500bp-long reads FNR: 0.49%
FPR: 0.04%
Acc: 99.95%
FNR: 0.81%
FPR: 0.33%
Acc: 99.66%
ROCker plot of NarG.500 ROCker model
NosZ: Nitrous oxide reductase, Prepared by Luis (Coto) Orellana [with --search blast]
NosZ for 80bp-long reads FNR: 0.89%
FPR: 7.44%
Acc: 98.65%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NosZ.80 ROCker model Positive:
173 proteins
Reference dataset
Last update: Jul-14-2015
NosZ for 100bp-long reads FNR: 1.09%
FPR: 5.44%
Acc: 98.33%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NosZ.100 ROCker model
NosZ for 125bp-long reads FNR: 1.09%
FPR: 0.66%
Acc: 99.01%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NosZ.125 ROCker model
NosZ for 150bp-long reads FNR: 0.73%
FPR: 1.82%
Acc: 98.94%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NosZ.150 ROCker model
NosZ for 200bp-long reads FNR: 1.16%
FPR: 0.84%
Acc: 98.97%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NosZ.200 ROCker model
NosZ for 250bp-long reads FNR: 0.61%
FPR: 0.75%
Acc: 99.33%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NosZ.250 ROCker model
NosZ for 500bp-long reads FNR: 0.73%
FPR: 0.24%
Acc: 99.51%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NosZ.500 ROCker model
NirK: Nitrite reductase, Prepared by Luis (Coto) Orellana [with --search blast]
NirK for 80bp-long reads FNR: 1.99%
FPR: 2.72%
Acc: 97.82%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NirK.80 ROCker model Positive:
147 proteins
Reference dataset
Last update: Jul-14-2015
NirK for 100bp-long reads FNR: 2.76%
FPR: 1.49%
Acc: 97.71%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NirK.100 ROCker model
NirK for 150bp-long reads FNR: 2.17%
FPR: 0.73%
Acc: 98.63%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NirK.150 ROCker model
NirK for 200bp-long reads FNR: 1.72%
FPR: 0.57%
Acc: 99.02%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NirK.200 ROCker model
NirK for 250bp-long reads FNR: 1.93%
FPR: 0.49%
Acc: 99.06%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NirK.250 ROCker model
NirK for 500bp-long reads FNR: 1.64%
FPR: 0.68%
Acc: 99.04%
FNR: NA
FPR: NA
Acc: NA
ROCker plot of NirK.500 ROCker model
AmoA_A: Ammonia monooxygenase (archaeal), Prepared by Luis (Coto) Orellana [with --search blast]
AmoA_A for 80bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_A.80 ROCker model Positive:
5 proteins
Negative:
16 proteins
Reference dataset
Explicitly excludes non-archaeal variants.
Last update: Nov-13-2015
AmoA_A for 100bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_A.100 ROCker model
AmoA_A for 125bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_A.125 ROCker model
AmoA_A for 150bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_A.150 ROCker model
AmoA_A for 200bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_A.200 ROCker model
AmoA_A for 250bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_A.250 ROCker model
AmoA_B: Ammonia monooxygenase (bacterial), Prepared by Luis (Coto) Orellana [with --search blast]
AmoA_B for 80bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_B.80 ROCker model Positive:
5 proteins
Negative:
16 proteins
Reference dataset
Explicitly excludes non-bacterial variants.
Last update: Nov-06-2015
AmoA_B for 100bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_B.100 ROCker model
AmoA_B for 125bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_B.125 ROCker model
AmoA_B for 150bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_B.150 ROCker model
AmoA_B for 200bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_B.200 ROCker model
AmoA_B for 250bp-long reads FNR: NA
FPR: NA
Acc: NA
FNR: NA
FPR: NA
Acc: NA
ROCker plot of AmoA_B.250 ROCker model