Kostas lab | Nonpareil

Use example instead: VC_2A_1009.1.fasta.gz. If set, Input file is ignored.

User data (optional)

Your name and a valid e-mail address (the results will be sent to this e-mail).

Job name & Input file

Reads to analyze. If you have paired-end reads, use only one sister per pair (help).

File format FastA FastQ

Preferred format: Gzipped FastQ (help).

Alignment kernel

Overlap:
Identity: %

Select alignment kernel for slower comparisons allowing imperfect matches (help).

K-mer kernel

K-mer length:

Select k-mer kernel for faster comparisons with perfect matches (help).

Sequence type Single-stranded
N as mismatch
Miscellaneous Random seed:
Query set size:

How Nonpareil understands the sequences (help).