ROCker

Search precompiled models

§ Query a precompiled ROCker model

We maintain a curated directory of pre-compiled ROCker models that you can query with your own short reads from metagenomes or amplicons. This task can be computationally expensive, and may take several hours (or days) to complete, depending on the size of the input file.

§ Input data



Your name, a valid e-mail address, and a name to identify the job.

NirK for 500 bp reads
(collection: NirK).



Reads to analyze (metagenome or amplicon). Preferred format: Gzipped FastA.

§ ROCker options

Search parameters.




Use length correction if the reads in your metagenome vary significantly from the expected model length.