[0s] Reading input [0s] Running Nonpareil [0s] Cmd: ["/storage/home/hcoda1/0/eomics3/data/Runbox/nonpareil/nonpareil", "-T", "alignment", "-f", "fasta", "-L", "25", "-S", "0.95", "-c", "-N", "-X", "998525", "-d", "0.7", "-s", "/storage/home/hcoda1/0/eomics3/scratch/nonpareil.res/674715d9be6fd/VC_2A_1009.1.fasta", "-b", "/storage/home/hcoda1/0/eomics3/scratch/nonpareil.res/674715d9be6fd/result", "-t", "8", "-R", "16384"]. Nonpareil v3.2 [ 0.0] Counting sequences [ 0.0] The file /storage/home/hcoda1/0/eomics3/scratch/nonpareil.res/674715d9be6fd/VC_2A_1009.1.fasta.enve-seq.94896 was just created [ 0.0] Longest sequence has 100 characters [ 0.0] Average read length is 92.824302 bp [ 0.0] Reading file with 565242 sequences [ 0.0] Counting query sequences [ 0.0] Sequences to store in 16321.055664Mb free: 166153216 (29395.058400%) [ 0.0] Querying library with 1.766544 times the total size (998525 seqs) [ 0.0] Building query set at /storage/home/hcoda1/0/eomics3/scratch/nonpareil.res/674715d9be6fd/VC_2A_1009.1.fasta.enve-seq.94896.subsample.94896 [ 0.0] Query set built with 565242 sequences [ 0.0] Designing the blocks scheme for 565242 sequences [ 0.0] Qry blocks:1, seqs/block:565242 [ 0.0] Sbj blocks:1, seqs/block:565242 [ 0.0] Mating sequences in 1 by 1 blocks [ 0.0] Allocating ~53 Mib in RAM for block qry:1 [ 0.1] Allocating ~53 Mib in RAM for block sbj:1 [ 0.1] Computing block 1/1 [ 0.1] Launching parallel comparisons to 8 threads [ 0.1] Searching sequences: 0.000000% of the block [ 328.3] Searching sequences: 1.000623% of the block [ 659.1] Searching sequences: 2.001245% of the block [ 987.4] Searching sequences: 3.001868% of the block [ 1316.5] Searching sequences: 4.002491% of the block [ 1645.6] Searching sequences: 5.003114% of the block [ 1975.3] Searching sequences: 6.003736% of the block [ 2301.6] Searching sequences: 7.004359% of the block [ 2629.1] Searching sequences: 8.004982% of the block [ 2953.0] Searching sequences: 9.005605% of the block [ 3284.0] Searching sequences: 10.006227% of the block [ 3612.8] Searching sequences: 11.006850% of the block [ 3942.3] Searching sequences: 12.007473% of the block [ 4271.4] Searching sequences: 13.008096% of the block [ 4600.2] Searching sequences: 14.008718% of the block [ 4926.4] Searching sequences: 15.009341% of the block [ 5252.9] Searching sequences: 16.009964% of the block [ 5581.6] Searching sequences: 17.010587% of the block [ 5910.6] Searching sequences: 18.011209% of the block [ 6237.2] Searching sequences: 19.011832% of the block [ 6565.4] Searching sequences: 20.012455% of the block [ 6893.6] Searching sequences: 21.013077% of the block [ 7222.0] Searching sequences: 22.013700% of the block [ 7550.5] Searching sequences: 23.014323% of the block [ 7878.4] Searching sequences: 24.014946% of the block [ 8204.6] Searching sequences: 25.015568% of the block [ 8531.6] Searching sequences: 26.016191% of the block [ 8857.1] Searching sequences: 27.016814% of the block [ 9183.8] Searching sequences: 28.017437% of the block [ 9510.1] Searching sequences: 29.018059% of the block [ 9838.5] Searching sequences: 30.018682% of the block [ 10166.3] Searching sequences: 31.019305% of the block [ 10493.7] Searching sequences: 32.019928% of the block [ 10822.7] Searching sequences: 33.020550% of the block [ 11151.4] Searching sequences: 34.021173% of the block [ 11478.8] Searching sequences: 35.021796% of the block [ 11805.2] Searching sequences: 36.022418% of the block [ 12134.6] Searching sequences: 37.023041% of the block [ 12463.8] Searching sequences: 38.023664% of the block [ 12793.3] Searching sequences: 39.024287% of the block [ 13119.9] Searching sequences: 40.024909% of the block [ 13450.7] Searching sequences: 41.025532% of the block [ 13777.9] Searching sequences: 42.026155% of the block [ 14104.0] Searching sequences: 43.026778% of the block [ 14430.6] Searching sequences: 44.027400% of the block [ 14758.6] Searching sequences: 45.028023% of the block [ 15085.7] Searching sequences: 46.028646% of the block [ 15415.0] Searching sequences: 47.029269% of the block [ 15737.9] Searching sequences: 48.029891% of the block [ 16065.9] Searching sequences: 49.030514% of the block [ 16392.2] Searching sequences: 50.031137% of the block [ 16717.8] Searching sequences: 51.031760% of the block [ 17044.5] Searching sequences: 52.032382% of the block [ 17370.2] Searching sequences: 53.033005% of the block [ 17699.0] Searching sequences: 54.033628% of the block [ 18026.5] Searching sequences: 55.034250% of the block [ 18352.6] Searching sequences: 56.034873% of the block [ 18680.9] Searching sequences: 57.035496% of the block [ 19007.6] Searching sequences: 58.036119% of the block [ 19334.2] Searching sequences: 59.036741% of the block [ 19663.3] Searching sequences: 60.037364% of the block [ 19989.1] Searching sequences: 61.037987% of the block [ 20315.2] Searching sequences: 62.038610% of the block [ 20643.4] Searching sequences: 63.039232% of the block [ 20971.4] Searching sequences: 64.039855% of the block [ 21300.4] Searching sequences: 65.040478% of the block [ 21629.4] Searching sequences: 66.041101% of the block [ 21956.9] Searching sequences: 67.041723% of the block [ 22281.6] Searching sequences: 68.042346% of the block [ 22606.4] Searching sequences: 69.042969% of the block [ 22934.5] Searching sequences: 70.043591% of the block [ 23264.2] Searching sequences: 71.044214% of the block [ 23592.9] Searching sequences: 72.044837% of the block [ 23919.6] Searching sequences: 73.045460% of the block [ 24247.5] Searching sequences: 74.046082% of the block [ 24576.5] Searching sequences: 75.046705% of the block [ 24902.1] Searching sequences: 76.047328% of the block [ 25230.2] Searching sequences: 77.047951% of the block [ 25554.3] Searching sequences: 78.048573% of the block [ 25882.5] Searching sequences: 79.049196% of the block [ 26208.7] Searching sequences: 80.049819% of the block [ 26534.5] Searching sequences: 81.050442% of the block [ 26861.6] Searching sequences: 82.051064% of the block [ 27188.7] Searching sequences: 83.051687% of the block [ 27516.3] Searching sequences: 84.052310% of the block [ 27843.8] Searching sequences: 85.052933% of the block [ 28172.4] Searching sequences: 86.053555% of the block [ 28501.2] Searching sequences: 87.054178% of the block [ 28828.7] Searching sequences: 88.054801% of the block [ 29157.7] Searching sequences: 89.055423% of the block [ 29486.1] Searching sequences: 90.056046% of the block [ 29812.4] Searching sequences: 91.056669% of the block [ 30139.5] Searching sequences: 92.057292% of the block [ 30465.3] Searching sequences: 93.057914% of the block [ 30791.5] Searching sequences: 94.058537% of the block [ 31117.8] Searching sequences: 95.059160% of the block [ 31443.8] Searching sequences: 96.059783% of the block [ 31769.5] Searching sequences: 97.060405% of the block [ 32096.3] Searching sequences: 98.061028% of the block [ 32300.8] Thread 3 completed 70656 comparisons, joining results [ 32381.2] Thread 1 completed 70656 comparisons, joining results [ 32401.4] Searching sequences: 99.061651% of the block [ 32536.4] Thread 7 completed 70650 comparisons, joining results [ 32540.1] Thread 5 completed 70656 comparisons, joining results [ 32593.4] Thread 2 completed 70656 comparisons, joining results [ 32598.5] Thread 0 completed 70656 comparisons, joining results [ 32604.4] Thread 6 completed 70656 comparisons, joining results [ 32617.1] Thread 4 completed 70656 comparisons, joining results [ 32617.1] Sub-sampling library [ 32617.1] Sampling at 0.000000% [ 32631.2] Sampling at 0.000265% [ 32645.6] Sampling at 0.000379% [ 32659.7] Sampling at 0.000541% [ 32673.8] Sampling at 0.000773% [ 32688.1] Sampling at 0.001104% [ 32702.5] Sampling at 0.001578% [ 32717.0] Sampling at 0.002254% [ 32731.4] Sampling at 0.003220% [ 32745.9] Sampling at 0.004600% [ 32760.3] Sampling at 0.006571% [ 32774.9] Sampling at 0.009387% [ 32789.5] Sampling at 0.013411% [ 32803.9] Sampling at 0.019158% [ 32818.4] Sampling at 0.027369% [ 32832.8] Sampling at 0.039098% [ 32847.1] Sampling at 0.055855% [ 32861.6] Sampling at 0.079792% [ 32876.1] Sampling at 0.113989% [ 32890.6] Sampling at 0.162841% [ 32905.1] Sampling at 0.232631% [ 32919.6] Sampling at 0.332329% [ 32934.3] Sampling at 0.474756% [ 32948.8] Sampling at 0.678223% [ 32963.5] Sampling at 0.968890% [ 32978.4] Sampling at 1.384129% [ 32993.5] Sampling at 1.977327% [ 33009.0] Sampling at 2.824752% [ 33024.6] Sampling at 4.035361% [ 33041.0] Sampling at 5.764801% [ 33058.3] Sampling at 8.235430% [ 33076.7] Sampling at 11.764900% [ 33096.6] Sampling at 16.807000% [ 33118.5] Sampling at 24.010000% [ 33142.9] Sampling at 34.300000% [ 33170.8] Sampling at 49.000000% [ 33204.3] Sampling at 70.000000% [ 33244.6] Sampling at 100.000000% [ 33294.4] Evaluating consistency [ 33294.4] Everything seems correct [253064s] Done