Enveomics collection

ogs.stats.rb

Estimates some descriptive statistics on a set of Orthology Groups (OGs).

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.
• Ruby gem json.

§ Usage

ogs.stats.rb --ogs in_file [opts]

§ Arguments

Ogs*

 --ogs in_file  Input file containing the precomputed OGs.

Json

 --json out_file  Output file in JSON format.

Tab

 --tab out_file  Output file in tabular format.

Transposed tab

 --transposed-tab out_file  Output file in transposed tabular format.

Auto

 --auto   Run completely quiertly (no STDERR or STDOUT).

Quiet

 --quiet   Run quietly (no STDERR output).

* Mandatory.