Enveomics collection

ogs.annotate.rb

Annotates Orthology Groups (OGs) using one or more reference genomes.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.

§ Usage

ogs.annotate.rb --in in_file --out out_file -a in_file [opts]

§ Arguments

Input file*

 --in in_file  Input file containing the OGs (as generated by ogs.mcl.rb).

Output file*

 --out out_file  Output file containing the annotated OGs.

Annotations*

 -a in_file  Input file(s) containing the annotations. One or more tab-delimited files with the gene names in the first column and the annotation in the second.

Format

 --format string  Format of the filenames for the annotation files, using regex syntax.

Quiet

 --quiet   Run quietly (no STDERR output).

* Mandatory.