Enveomics collection

clust.rand.rb

Calculates the Rand Index and the Adjusted Rand Index between two clusterings. The clustering format is a raw text file with one cluster per line, each defined as comma-delimited members, and a header line (ignored). Note that this is equivalent to the OGs format for 1 genome.

    See source code, Artistic license 2.0.

§ References

    Rand, 1971, J Am Stat Assoc; Hubert & Arabie, 1985, J Classif; Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.

§ Usage

clust.rand.rb --clust1 in_file --clust2 in_file [opts]

§ Arguments

Input file 1*

 --clust1 in_file  First input file.

Input file 2*

 --clust2 in_file  Second input file.

Precision

 --prec integer  Precision to report.

Quiet

 --quiet   Run quietly (no STDERR output).

* Mandatory.