Enveomics collection

Table.replace.rb

Replace a field in a table using a mapping file.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.

§ Usage

Table.replace.rb --map in_file --in in_file --out out_file [opts]

§ Arguments

Map*

 --map in_file  Mapping file with two columns (key and replacement).

In*

 --in in_file  Input table.

Out*

 --out out_file  Output table.

Key

 --key integer  Column to replace in Input table.

Unknown

 --unknown string  String to use whenever the key is not found in Map.

Delimiter

 --delimiter string  String delimiting columns. By default, tabulation.

* Mandatory.