Enveomics collection

A toolbox for microbial genomics and metagenomics

TRIBS.plot-test.R

Plots an `enve.TRIBStest` object.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

§ Usage

TRIBS.plot-test.R --x in_file [opts] out_file float float

§ Arguments

Input TRIBS Test*
 --x in_file  'enve.TRIBStest' object to plot.
Type
 --type select  What to plot. 'overlap' generates a plot of the two contrasting empirical PDFs (to compare against each other), 'difference' produces a plot of the differences between the empirical PDFs (to compare against zero).
Col
 --col string  Main color of the plot if type='difference'.
Col1
 --col1 string  First color of the plot if 'Type' is overlap. 'Col' by default.
Col2
 --col2 string  Second color of the plot if 'Type' is overlap.
Ylab
 --ylab string  Y-axis label.
Xlim
 --xlim string  X-axis limits, separate values by comma.
Ylim
 --ylim string  Y-axis limits, separate values by comma.
Output file*
 out_file  Output file in PDF format.
Width*
 float  Width of the plot in inches.
Height*
 float  Height of the plot in inches.
* Mandatory.