Enveomics collection

SRA.download.bash

Downloads the set of runs from a project, sample, or experiment in SRA. If the expected file already exists, skips the file if the MD5 hash matches.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• GNU Bash.
• curl.

§ Usage

SRA.download.bash string [opts]

§ Arguments

SRA ID*

 string  ID of the SRA Project, Sample, or Experiment.

dir

 out_dir  Directory where the files are to be downladed. By default, same as 'SRA ID'.

* Mandatory.