Enveomics collection

MyTaxa.fragsByTax.pl

Identifies fragments annotated as a taxon in MyTaxa.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Perl.

§ Usage

MyTaxa.fragsByTax.pl in_file string [opts] > out_file

§ Arguments

MyTaxa output*

 in_file  Classification file generated by MyTaxa.

Taxon*

 string  Taxon to look for.

Rank

 string  Rank of taxon (optional). By default: any rank.

Output file*

 out_file  List of fragment IDs.

* Mandatory.