JPlace.distances.rb
Extracts the distance (estimated branch length) of each placed read to a given node in a JPlace file.
See source code, Artistic license 2.0.
§ References
Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.
§ Requirements
§ Usage
JPlace.distances.rb --in in_file --node string --out out_file [opts]
§ Arguments
- Input file*
--in in_file.jplace input file containing the read placement.- Node*
--node stringIndex (number in curly brackets) of the node to which distances should be measured.- Output file*
--out out_fileOutput file in tabular format.- In node
--in-node stringReport only reads placed at this node or it's children.- Quiet
--quietRun quietly (no STDERR output).