Enveomics collection

GenBank.add_fields.rb

Adds annotations to GenBank files.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.

§ Usage

GenBank.add_fields.rb --genbank in_file --table in_file --out out_file [opts]

§ Arguments

Genbank*

 --genbank in_file  Input GenBank file.

Table*

 --table in_file  Input file containing the annotations. It must be a tab-delimited raw table including a header row with the names of the fields.

Out*

 --out out_file  Output file containing the annotated GenBank.

Key

 --key integer  Key of the column to use as identifier.

Split

 --split string  String that separates multiple entries in the annotation features.

Quiet

 --quiet   Run quietly (no STDERR output).

* Mandatory.