FastQ.filter.pl
Extracts a subset of sequences from a FastQ file.
See source code, Artistic license 2.0.
§ References
Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.
§ Requirements
- Perl.
§ Usage
FastQ.filter.pl [opts] in_file in_file > out_file
§ Arguments
- Reverse list
-r
Extracts sequences NOT present in the list.- Quiet
-q
Runs quietly.- List*
in_file
List of sequences to extract.- Seqs.fq*
in_file
FastQ file containing the superset of sequences.- Subset.fq*
out_file
FastQ file to be created.