Enveomics collection

FastA.toFastQ.rb

Creates a FastQ-compliant file from a FastA file.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.

§ Usage

FastA.toFastQ.rb --in in_file --out out_file [opts]

§ Arguments

Input FastA*

 --in in_file  Input FastA file (supports .gz compression).

Output FastQ*

 --out out_file  Output FastQ file (supports .gz compression).

Quality

 --quality integer  PHRED quality score to use (fixed), in the range [-5, 41].

Encoding

 --encoding integer  Base encoding (33 or 64).

* Mandatory.