Enveomics collection

FastA.split.rb

Evenly splits a multi-FastA file into multiple multi-FastA files.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.

§ Usage

FastA.split.rb --input in_file --prefix out_file [opts]

§ Arguments

Input*

 --input in_file  Input FastA file.

Prefix*

 --prefix out_file  Prefix of output FastA files.

Number

 --number integer  Number of output files to produce.

Zero padded

 --zero-padded   Use zero-padded numbers as output index.

Lowercase letters

 --lowercase-letters   Use lowercase letters as output index.

Output format

 --out string  Format of output filenames, where %s are replaced by prefix and index.

Quiet

 --quiet   Run quietly (no STDERR output).

* Mandatory.