Enveomics collection

FastA.rename.pl

Renames a set of sequences in FastA format.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Perl.

§ Usage

FastA.rename.pl [opts] in_file in_file > out_file

§ Arguments

Filter list

 -f   Ignore sequences NOT present in the list.

Quiet

 -q   Runs quietly.

List.txt*

 in_file  Tab-delimited list of sequences, with the original ID in the first column and the ID to use in the second.

Seqs.fa*

 in_file  FastA file containing the superset of sequences.

Renamed.fa*

 out_file  FastA file to be created.

* Mandatory.