FastA.qlen.pl
Calculates the quartiles of the length in a set of sequences. The Q2 is also known as the median. Q0 is the minimum length, and Q4 is the maximum length. It also calculates TOTAL, the added length of the sequences in the file, and AVG, the average length.
See source code, Artistic license 2.0.
§ References
Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.
§ Requirements
- Perl.
§ Usage
FastA.qlen.pl in_file [opts]
§ Arguments
- Sequences*
in_fileA FastA file containing the sequences.- Minimum Length
integerThe minimum length to take into consideration.