FastA.filter.pl
Extracts a subset of sequences from a FastA file.
See source code, Artistic license 2.0.
§ References
Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.
§ Requirements
- Perl.
§ Usage
FastA.filter.pl [opts] in_file in_file > out_file
§ Arguments
- R
-r
Reverse list. Extracts sequences NOT present in the list.- Q
-q
Runs quietly.- List*
in_file
List of sequences to extract.- Sequences*
in_file
FastA file containing the superset of sequences.- Subset*
out_file
FastA file to be created.