FastA.N50.pl
Calculates the N50 value of a set of sequences. Alternatively, it can calculate other N** values. It also calculates the total number of sequences, the total added length, and the longest sequence length.
See source code, Artistic license 2.0.
§ References
Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.
§ Requirements
- Perl.
§ Usage
FastA.N50.pl in_file [opts]
§ Arguments
- Sequences*
in_fileA FastA file containing the sequences.- Minimum length
integerMinimum length to take into consideration.- NXX
integerValue NXX to calculate.