BlastTab.taxid2taxrank.pl
Takes a BLAST with NCBI Taxonomy IDs as subjects and replaces them by names at a given taxonomic rank.
See source code, Artistic license 2.0.
§ References
Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.
§ Requirements
- Perl.
§ Usage
BlastTab.taxid2taxrank.pl in_file in_file in_file string [opts] > out_file
§ Arguments
- tax_blast.txt*
in_file
BLAST output, where subject IDs are NCBI Taxonomy IDs.- nodes.dmp*
in_file
Nodes file from NCBI Taxonomy.- names.dmp*
in_file
Names file from NCBI Taxonomy.- rank*
string
The rank to be reported. All the reported nodes will have the same rank. To see supported values, run: `cut -f 5 nodes.dmp | sort -u`.- Best-hit
select
Should it take into account the best hit per query only? This is: should it filter by best-hit?- taxrank_list.txt*
out_file
BLAST-like output, where subject IDs are Taxonomy names.