Enveomics collection

BlastTab.kegg_pep2path_rest.pl

Takes a BLAST against KEGG_PEP (or KO) and retrieves the pathways in which the subject peptides are involved.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Perl.
• Perl library JSON.
• Perl library LWP::Simple.

§ Usage

BlastTab.kegg_pep2path_rest.pl in_file [opts] > out_file

§ Arguments

blast.txt*

 in_file  Input tabular BLAST file.

Cache file

 out_file  (optional) File containing the saved cache. If unset, the cache won't be recoverable across instances of this script. It is strongly recommended to set a file. Multiple parallel instances of this script may use the same cache file.

output.txt*

 out_file  Tab-delimited output file, with the columns: (1) Query ID, (2) Subject ID, (3) Pathway ID, (4) Pathway (reference) description, (5) Organism.

* Mandatory.