BlastTab.filter.pl
Extracts a subset of hits (queries or subjects) from a tabular BLAST.
See source code, Artistic license 2.0.
§ References
Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.
§ Requirements
- Perl.
§ Usage
BlastTab.filter.pl [opts] in_file in_file > out_file
§ Arguments
- Subject
-s
If set, assumes that list.txt contains subject IDs. By default: assumes query IDs.- Inverse
-i
If set, reports the inverse of the list (i.e., reports only hits absent in the list).- list.txt*
in_file
List of IDs to extract.- blast.txt*
in_file
Tabular BLAST file containing the superset of hits.- subset.txt*
out_file
Tabulat BLAST file to be created.