Enveomics collection

BlastTab.cogCat.rb

Replaces the COG gene IDs in a BLAST for the COG category.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Ruby >= 2.0.

§ Usage

BlastTab.cogCat.rb --whog in_file --blast in_file [opts] > out_file

§ Arguments

Whog*

 --whog in_file  COG's 'whog' file.

Blast*

 --blast in_file  Tabular BLAST file with COG IDs as subject.

Cog

 --cog   If set, returns the COG ID, not the COG category.

Desc

 --desc   Includes COG description (requires --cog).

Noverbose

 --noverbose   Run quietly, but show warnings.

Quiet

 --quiet   Run quietly.

COG Blast*

 out_file  Tabular BLAST with COG ID's or categories as subject.

* Mandatory.