Enveomics collection

BlastTab.best_hit_sorted.pl

Filters a tabular BLAST to retain only the best matches.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• Perl.

§ Usage

BlastTab.best_hit_sorted.pl select in_file | [opts] > out_file

§ Arguments

Sort*

 select  Use 'sort' if your BLAST is not pre-sorted by the first column (or if you're not sure). Use 'cat' otherwise.

Input BLAST*

 in_file  Tabular BLAST file to filter.

Script

 task 

Output BLAST*

 out_file  Filetered tabular BLAST output.

* Mandatory.