Enveomics collection

BlastTab.advance.bash

Calculates the percentage of a partial BLAST result. The value produced slightly subestimates the actual advance, due to un-flushed output and trailing queries that could be processed but generate no results.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

• GNU Bash.
• GNU Awk.

§ Usage

BlastTab.advance.bash in_file in_file

§ Arguments

Blast*

 in_file  Incomplete Tabular BLAST output.

Query FastA*

 in_file  FastA file with query sequences.

* Mandatory.