Enveomics collection

A toolbox for microbial genomics and metagenomics

BlastTab.addlen.rb

Appends an extra column to a tabular BLAST with the length of the query or the subject sequence.

    See source code, Artistic license 2.0.

§ References

    Rodriguez-R & Konstantinidis, 2016, PeerJ Preprints.

§ Requirements

§ Usage

BlastTab.addlen.rb --fasta in_file [opts] < in_file > out_file

§ Arguments

Fasta*
 --fasta in_file  FastA file of the query or the subject.
Subject
 --subject   Use the subject column of the BLAST, by default the query column is used.
If used, the input FastA must contain subject sequences.
Quiet
 --quiet   Run quietly (no STDERR output).
Input file*
 in_file  Input tabular BLAST file.
Output file*
 out_file  Output tabular BLAST file with additional column.
* Mandatory.